Archive for the ‘Amanda Kahn’ Category

Sponge Behavior & the Emergence of Neural Systems

September 20, 2012

In a previous post, entitled “Do sponges have the nerve to eat?“, Mr. Singer Singh asked the following question:

“It is found that sponges tend to show different behaviors when exposed to certain stimuli such as touch, air and poison it result in closure of osculum and pores. but then how those response is possible with out any brain or nerves?”

I didn’t have all of the background to answer his question, so I forwarded it to Nathan Farrar, a graduate student at the University of Alberta who studies just such behaviors in sponges.  Check out his post below:

Sponge Behavior and the Emergence of Neural Systems

by Nathan Farrar, University of Alberta

This is a very interesting question, in fact, likely one of the more interesting in sponge physiology. It is of course quite true that despite histological searches for nerve or neural-like tissue in sponges, the absence of such tissue is bona fide.  It is also true that sponges exhibit coordinated behaviors in response to diverse stimuli.  For example, Ephydatia muelleri and Spongilla lacustrus, both demosponges, generate an “inflation-contraction”-type behavior.  While a video is worth a thousand words, imagine looking down on a sponge in such a way that the canal system is visible.  During the inflation period, the canals throughout the animal ‘inflate’ allowing the canal system to be engorged with water.  During the contraction phrase, as the name suggests, the canal system is contracted exerting force on the water in the channels thereby forcing it out of the canal system through the osculum (i.e., the vent from which filtered water passes from the animal).  This coordinated behavior serves to flush the canal system of any accumulating debris or toxins, but as the questioner notes can also be triggered by mechanical force.  (See a video of the inflation-contraction response here, http://jeb.biologists.org/content/210/21/3736/suppl/DC1)

So, in short, the facts of the question are entirely correct, but how is this response is generated,  anticlimactic as it may be, is unknown.  A few ways through which behaviors can be coordinated in an organism are via electrical signaling, chemical signaling and mechanical coupling.  I’ll comment here on the first two:  There is one known example of electrical signaling in the form of an action potential in the syncytial glass sponge (Class Hexactinellida), however, the response involved is the arresting of the feeding current, rather than a whole body response as is the case with the “inflation-contraction” response described above.  With respect to chemical signaling, the amino acid L-glutamate has been shown to trigger the “inflation-contraction” response in Ephydatia muelleri in a dose-dependent manner.  Interestingly, in Ephydatia, GABA acts antagonistically with glutamate to suppress the response.  Now, this is curious because glutamate and GABA are major excitatory and inhibitory neurotransmitters, respectively, in animal nervous systems.  Other molecules classically thought of in terms of neurotransmission have also been described in sponges including, serotonin, acetylcholine, epinephrine, norepinephrine, and nitric oxide.  Furthermore, a set of proteins collectively known as post-synaptic density proteins, named for their clustering in neurons, have also been shown to be present in sponges.  What role(s), if any, these other molecules play in coordinating sponge behaviors is unknown.  Furthermore, how glutamate triggers and “inflation-contraction” response, or how GABA inhibits it is unknown.  One hypothesis is that a calcium wave is initiated by glutamate which spreads across the sponge body serving as a coordinating signal for the behavior.

If we consider these facts for a moment we realize there are some interesting evolutionary implications.  Here are a group of animals with no nerves or muscle, yet able to sense their environment and initiate coordinated body responses.  Yet, they also possess a set of “neural” proteins.  While these observations are compatible with more than one hypothesis, one certainly worth examining is that sponges resemble animals situated at the edge of acquiring what we would recognize as a primitive nervous system.

Further reading:

On coordinated behavior in sponges, see Leys, S.P., Meech, R.W. (2006). Physiology of Coordination in Sponges.  Can J Zool. 84: 288-306.

On sponges and the emergence of neural systems, see Renard, E., Vacelet, J., Gazave, E., Lapebie, P., Borchiellini, C., Ereskovsky, A.V. (2009).  Origin of the neuro-sensory system: new and expected insights from sponges. Int Zool. 4: 294-308.

And, Nickel, M.  (2010).  Evolutionary emergence of synaptic nervous systems: what can we learn from the non-synaptic, nerveless Porifera?  Invert Biol. 129: 1-16.

Scuba Talk Now, Pirate’s Radio (KNRY 1240) features MLML Student Amanda Kahn

August 14, 2010

Get to bed early tonight because Sunday morning at 8:00, MLML student Amanda Kahn will be interviewed on Scuba Talk Now, Pirate’s Radio!  The interview will air on KNRY AM 1240, and will feature questions about some of the things that Amanda has learned about for her research.  Come find out what it’s like doing deep-sea research, what is so great about  scientific diving, and learn a ton about the animals that Amanda studies: marine sponges!  Check out the posts below for some background info, then listen in and be ready to ask more questions!

Animal, celebrity, or cake?

Do sponges have the nerve to eat?

Scuba Talk Now, Pirate's Radio

Scuba Talk Now (Station KNRY, AM 1240) will feature MLML student Amanda Kahn this Sunday at 8:00 AM.

2010 Open House Puppet Show: Dora the Sperm Whale Explorer’s Deep-Sea Adventure

August 10, 2010
Amanda Kahn

Amanda Kahn

by Amanda Kahn, Invertebrate Zoology and Molecular Ecology Lab

In April, MLML opened its doors to the public and we spent the weekend showcasing our research and teaching people about marine science.  We did this in a variety of ways: lectures, seminars, interactive exhibits, touch tanks, science as art, and even in puppet form!  For those of you who missed the show, you can still learn about Dora the Sperm Whale’s exploration of the deep sea, discover different deep-sea habitats, and find out all about the many ways that animals eat!  Check out the two-part video below, and be sure to catch our hit songs “Chemoautotrophy” and “Vertical Migration”!

Part 1:

Part 2:

Got any questions about the animals or habitats you saw in the show?  Comment below or email and we’ll tell you all about them!

Credits

Puppeteering, stage design, sound setup, logistics:

Jeremiah Brower, Billy Cochran, Marilyn Cruickshank, May Deluna-Schneider, Amanda Kahn, Stephanie Kennedy, Deasy Lontoh, Erin Loury, Ben Perlman, Jasmine Ruvalcaba, Sonya Sankaran

Video editing by Wavelength Films

Donors Choose – and we choose marine science!

October 14, 2009
Amanda Kahn

Amanda Kahn

by Amanda Kahn, Invertebrate Zoology and Molecular Ecology Lab

A major part of science is collaboration, because some projects require more effort, resources, or people than one lab can handle.  Collaborating allows us to tackle bigger projects and tasks than what would otherwise be possible.  The folks at Deep Sea News organized a collaboration with many other marine science blogs to sponsor support of K-12 marine science education.  Deep Sea News, the Drop-In, Southern Fried Science, Blogfish, Oyster’s Garter, Echinoblog, Cephalopodcast, The New Blue, The Right Blue, Natural Patriot, and Malaria, Bedbugs, Sealice, and Sunsets have all banded together to support Donors Choose, a website that allows teachers to ask donors to fund special projects for their classes.  We worked together and chose some of the marine science projects most in need, and now we’d like to collaborate with you to get those projects funded!  Check out the list of projects here: Ocean Bloggers Oceans in the Classroom Initiative.

Mrs S's class needs waders

Quiet times in the hallways of MLML

August 10, 2009
Amanda Kahn

Amanda Kahn

by Amanda Kahn, Invertebrate Zoology and Molecular Ecology Lab

Summertime at the labs is an industrious time, with many of us working hard on our thesis projects while we don’t have to worry about classes. Our time here at MLML is divided into two major stages: the stage when we take classes like oceanography, laboratory techniques, and background classes (like marine botany or a class about birds, turtles, and mammals), and the stage when we work on our own research project. The class stage is really important–it allows us to choose what field interests us, and what kinds of research are going on in that field. We take the classes so we can learn about a field and start asking questions. We keep asking questions and learning more until finally our questions can’t be answered–because the answers haven’t been figured out yet. That is where the thesis research comes in!

Once we come up with a question that is interesting to us and unknown in the world so far, then we design a research project and follow the steps of the scientific method to address that question to the best of our abilities. It’s a little sample of what scientific research is like. From doing a thesis project, we students can figure out if we are interested in becoming scientific researchers or if we prefer non-research science pursuits.

Even if a student ultimately decides not to go into research, however, everyone conducts research while they are here at MLML. That is why the hallways are quiet right now–everyone is holed up in their labs working on their research projects, or sitting at home reading about possible project ideas.

Or, the hallways may just be quiet because it’s summer and the beach is only a 5 minute walk away…

 

It's hard to keep working when the beach is so close by! Credit: Amanda Kahn 2006

It's hard to keep working when the beach is so close by! Credit: Amanda Kahn 2006

A once-in-a-lifetime experience in Antarctic waters

June 25, 2009
Amanda Kahn

Amanda Kahn

by Amanda Kahn, Invertebrate Zoology and Molecular Ecology Lab

Land ho!  Two months ago, I left MLML and California on a flight to Chile to help out on a 40-day research cruise in Antarctica’s Weddell Sea.  During the months leading up to the cruise, I worked dual lives–struggling to keep up with work at school while also making arrangements for travel, going through the necessary medical tests and preliminary cruise preparation, and starting up on my job as a public outreach person on the ship (I wrote a blog, just like my posts here).

Being out at sea for 40 days was an incredible and unique experience.  Many of the things we take for granted on land are just different on a ship (stable ground, for example!).  I was worried about being seasick the entire time, but I got my sea legs after a few days and was able to function just fine in almost any weather.  Since everything on a ship is constantly moving, everything must be tied down or secured to prevent it from sliding around or falling.  Laptop computers were tied down to tables and sat on non-skid mats to protect them–actually, anything that we didn’t want to have slide off the tables sat on non-skid mats, including our dinner plates!  We had safety drills every week, which included fire drills and abandon ship drills.  Also, we only had whatever we brought on the ship with us from the beginning, which meant that for six weeks, we had to make fresh foods last!  Over the course of the cruise, our fresh foods progressed from a salad bar brimming with fresh fruits and veggies to a meager selection of hardy vegetables, like iceberg lettuce and carrots, and finally to preserved foods such as olives, pickles, and canned peaches and pineapple slices.

For the most part, I found life on the ship to be rather exciting, but certain aspects were difficult.  We had no internet connection, and the email system transferred emails by satellite three times a day.  That meant limited contact with people on shore.  It also meant no YouTube, Google, or any other online websites.  The science we did onboard more than  made up for the lack of online entertainment, however.  Trawls through the top 300 meters of water brought up animals like Antarctic krill, salps, jellies, swimming worms, and even swimming snail relatives called pteropods.

Antarctic krill, the main food source for baleen whales that migrate to the Southern Ocean, were collected in trawls.

Antarctic krill, the main food source for baleen whales that migrate to the Southern Ocean, were collected in trawls.

I’m now back in action at MLML, and ready to write again about what life is like here at the labs. It will be very different from life on the ship, but I think certain things are quite a bit nicer here on land (stable ground, for instance!).

Adventures in the Antarctic

March 8, 2009
Amanda Kahn

Amanda Kahn

by Amanda Kahn, Invertebrate Zoology and Molecular Ecology Lab

Buenos dias, everyone!

I am writing to you from Punta Arenas, Chile right now.  For the next six weeks, I will participate in a research cruise to the Weddell Sea near Antarctica.  During that time, I will be blogging from another website, so please come check out what we’re up to at a web site created especially for our cruise by MBARI.

Can I become a marine scientist even if I get seasick?

December 8, 2008
Amanda Kahn

Amanda Kahn

by Amanda Kahn, Invertebrate Zoology and Molecular Ecology Lab

I went out to sea yesterday and it was INCREDIBLE!  We saw animals we’d never seen before, explored an underwater canyon that is deeper than the Grand Canyon, and spent a beautiful day out on calm seas aboard the R/V Point Lobos.  As I was miles away from solid ground, I pondered the irony of my choice of career – you see, I get seasick.  Horribly seasick.  I was the only person running out to the side of the boat every half hour to, uh, fertilize the ocean.  I’ve tried taking Dramamine, eating saltine crackers and drinking ginger ale, pressure point bands, even wearing a paper bag against my stomach (which kind of works, actually…), but nothing fully gets rid of that queasy feeling.  So how can I tolerate going out and being sick all day?  Basically, I am really excited about learning about things that live under the ocean.  So interested, in fact, that I don’t mind the seasickness so much!  I wanted to write about this because people who get seasick should know that it is still possible to have a successful, happy career in marine science.

First of all, some tips to help eliminate or reduce seasickness:

Pressure point bands can help alleviate seasickness in some people.

Pressure point bands can help alleviate seasickness in some people.

  • Medications such as Dramamine, Bonine, and Marezine are helpful.  They are most effective if you take one pill the night before going out on a boat, then another about one hour before the boat is underway.
  • Pressure point bands work for some people.  These look like bracelets with a little knob that presses on a pressure point on the inside of your wrist.  If you start feeling sick, you can press the knobs into the pressure point.
  • Ginger, whether in the form of fresh, dried, candied, or ginger ale, helps ease upset stomachs (although I personally think candied ginger tastes terrible!).
  • Carbonated beverages (especially ginger ale) are also helpful for upset stomachs.
  • Surprisingly, keeping some food in your stomach can be really helpful.  I don’t start feeling really sick until my stomach is completely empty.
  • Scopalamine is a prescription drug that you can ask for.  It comes in a little patch that you wear behind your ear.  It releases medication into your body slowly over time.  Some people get a little loopy on this, but it is supposed to be one of the best medications.
  • A brown paper bag (huh?).  A friend of mine just told me about this one, and basically, you just put a paper bag under your clothes, in contact with your stomach.

These solutions would not all be necessary if so many people didn’t end up with the same problem that I have.  Seasickness is common!  Everyone figures out the best way to deal with it (for example, my favorite is to take Bonine, wear pressure point bands, drink ginger ale, and keep some food in my stomach).  The other scientist on yesterday’s cruise wore a Scopalamine patch.  If you tend to get seasick, you’re not alone!  And you can still pursue marine science.  In my next post, I’ll tell you about some of the amazing things we saw on our cruise, and you’ll see why seasickness is minor compared to the amazing coolness that is marine science and oceanography.  *Sigh*


You can already check out some of the cool things people do at sea with this video! Also, share your favorite seasickness remedies by leaving a comment!

Bivalve questions make me happy as a clam!

November 17, 2008
Amanda Kahn

Amanda Kahn

by Amanda Kahn, Invertebrate Zoology and Molecular Ecology Lab

In our Ask a Grad Student page, Leeanna asked a bunch of really good questions, and all revolve around bivalves.  Now, maybe you think you don’t know bivalves well enough to have them over for dinner, but I expect that many of you actually have had them FOR dinner!  Bivalves include clams, mussels, oysters, scallops, and other generally clam-shaped animals with two shells.  Class Bivalvia is within Phylum Mollusca, and its closest neighbors on the evolutionary tree are Classes Monoplacophora (extinct, snail-like animals), Polyplacophora (chitons), Gastropoda (snails and slugs), Scaphopoda (tusk shells), and Cephalopoda (octopuses and squids).  Too much information?  Too much information.  Sorry.  On to the questions!

Q: How do bivalves pump out water?

A: On each side of the foot inside of the bivalve (let’s say, for example, a clam), there are two big hollows, called mantle cavities.  On one end of the bivalve’s shell, there is an inhalant and exhalant siphon, which the clam uses to pump water in and out of the mantle cavities.

There's some heavy-duty pumping going on...water pumping, that is!

There is some heavy-duty pumping going on...water pumping, that is! From Mutts comic strip by Patrick McDonnell

Q: How do bivalves eat their food?
(more…)

Do sponges have the nerve to eat?

October 24, 2008
Amanda Kahn

Amanda Kahn

by Amanda Kahn, Invertebrate Zoology and Molecular Ecology Lab

Hi again.  I received a few questions in my previous post that I would like to address in this post.  A user named doughnutfan asked three great questions about sponges.

Q: Are the spicules themselves responsible for filtering out the food particles?

A: Sponge spicules do not filter food particles out of the water – what they do is support the cells that do.  I often think of sponges as skyscrapers (yes, I really do); it makes it a lot easier to visualize what different body parts of sponges are good for.  Spicules are like the beams and internal structures that support the skyscraper – they provide support and give the sponge its shape.  Spicules also make sponges hard to eat; very few animals can handle passing glass shards through their digestive systems!

Instead, what is responsible for filtering food out of the water is a type of cell called a choanocyte (ko-AN-oh-site).  It looks like a funny name at first, but it’s named after a group of microscopic single-celled organisms called choanoflagellates.  The choanocytes in sponges look just like the free-roaming choanoflagellates, but intsead of being solitary, single-celled organisms, sponge choanocytes are clustered together and work together to get food.  As a side note, the strong similarity between the way choanoflagellates and sponge choanocytes is no coincidence.  Currently, the favored hypothesis of how animals first evolved from single-celled organisms is that choanoflagellates evolved into sponges (specifically, the choanocytes in sponges).  (more…)


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